SNP Profiles matching NA 26

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_Input profile	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
1._NA_26	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
2._NA_26	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
3._NA_26	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
4._NA_26	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
5._GC-04-021-2-03	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
6._GC-04-021-2-03	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
7._GC-04-021-2-03	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
8._GC-04-021-2-03	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
9._GC-04-021-2-03	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
10._RUQ_1230	_	AA	CG	TT	_	_	_	TT	_	_	_	_	CT	AG
11._RUQ_1230	CC	AG	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
12._NA_33	CC	AG	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
1._NA_26	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
2._NA_26	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
3._NA_26	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
4._NA_26	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
5._GC-04-021-2-03	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
6._GC-04-021-2-03	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
7._GC-04-021-2-03	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
8._GC-04-021-2-03	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
9._GC-04-021-2-03	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
10._RUQ_1230	_	_	_	_	CC	CC	GG	_	CC	AC	GG	GG	CT	CC
11._RUQ_1230	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
12._NA_33	CT	AA	GG	CC	CC	CC	GG	AA	CT	AA	GG	GG	CT	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
1._NA_26	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
2._NA_26	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
3._NA_26	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
4._NA_26	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
5._GC-04-021-2-03	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
6._GC-04-021-2-03	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
7._GC-04-021-2-03	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
8._GC-04-021-2-03	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
9._GC-04-021-2-03	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
10._RUQ_1230	AA	_	AT	CT	AG	CG	AA	CT	GG	AC	_	_	X_X	X_X
11._RUQ_1230	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
12._NA_33	AA	GG	AT	TT	AG	CG	AA	CT	GG	AC	AT	GG	X_X	X_X

Input profile: NA_26

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Mars Center for Cocoa Science, Brazil

Location: 4203 4 > FP

Dapeng Zhang, 2016

1._NA_26

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 8 > FP

Dapeng Zhang, 2016

2._NA_26

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 7 > FP

Dapeng Zhang, 2016

3._NA_26

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 6 > FP

Dapeng Zhang, 2016

4._NA_26

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._NA_26 GC-04-021-2-03

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._NA_26 GC-04-021-2-03

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

7._NA_26 GC-04-021-2-03

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP1

8._NA_26 GC-04-021-2-03

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP2

9._NA_26 GC-04-021-2-03

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

10._NA_26 RUQ_1230

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._NA_26 RUQ_1230

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._NA_33

92.5 %
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: M6 18, 19

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25